LCA5

Protein-coding gene in the species Homo sapiens
LCA5
Identifiers
AliasesLCA5, C6orf152, Leber congenital amaurosis 5, lebercilin, lebercilin LCA5
External IDsOMIM: 611408 MGI: 1923032 HomoloGene: 32718 GeneCards: LCA5
Gene location (Human)
Chromosome 6 (human)
Chr.Chromosome 6 (human)[1]
Chromosome 6 (human)
Genomic location for LCA5
Genomic location for LCA5
Band6q14.1Start79,484,991 bp[1]
End79,537,458 bp[1]
Gene location (Mouse)
Chromosome 9 (mouse)
Chr.Chromosome 9 (mouse)[2]
Chromosome 9 (mouse)
Genomic location for LCA5
Genomic location for LCA5
Band9|9 E2Start83,272,346 bp[2]
End83,323,180 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • bronchial epithelial cell

  • caput epididymis

  • Achilles tendon

  • secondary oocyte

  • right uterine tube

  • ganglionic eminence

  • corpus epididymis

  • tibialis anterior muscle

  • islet of Langerhans

  • smooth muscle tissue
Top expressed in
  • superior cervical ganglion

  • hand

  • spermatid

  • spermatocyte

  • trigeminal ganglion

  • retinal pigment epithelium

  • ganglionic eminence

  • primitive streak

  • secondary oocyte

  • habenula
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • protein binding
  • protein-containing complex binding
Cellular component
  • cytoplasm
  • cell projection
  • cilium
  • cytoskeleton
  • microtubule organizing center
  • axoneme
  • photoreceptor connecting cilium
  • ciliary basal body
Biological process
  • protein transport
  • intraciliary transport
  • photoreceptor cell maintenance
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

167691

75782

Ensembl

ENSG00000135338

ENSMUSG00000032258

UniProt

Q86VQ0

Q80ST9

RefSeq (mRNA)

NM_001122769
NM_181714

NM_027448
NM_029434

RefSeq (protein)

NP_001116241
NP_859065

NP_081724
NP_083710

Location (UCSC)Chr 6: 79.48 – 79.54 MbChr 9: 83.27 – 83.32 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Lebercilin, also known as leber congenital amaurosis 5 (LCA5), is a protein that in humans is encoded by the LCA5 gene.[5][6][7] This protein is thought to be involved in centrosomal or ciliary functions.

Clinical significance

Mutations in the LCA5 gene are associated with Leber's congenital amaurosis.

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000135338 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000032258 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: Leber congenital amaurosis 5".
  6. ^ Dharmaraj S, Li Y, Robitaille JM, Silva E, Zhu D, Mitchell TN, Maltby LP, Baffoe-Bonnie AB, Maumenee IH (January 2000). "A novel locus for Leber congenital amaurosis maps to chromosome 6q". Am. J. Hum. Genet. 66 (1): 319–26. doi:10.1086/302719. PMC 1288337. PMID 10631161.
  7. ^ den Hollander AI, Koenekoop RK, Mohamed MD, Arts HH, Boldt K, Towns KV, Sedmak T, Beer M, Nagel-Wolfrum K, McKibbin M, Dharmaraj S, Lopez I, Ivings L, Williams GA, Springell K, Woods CG, Jafri H, Rashid Y, Strom TM, van der Zwaag B, Gosens I, Kersten FF, van Wijk E, Veltman JA, Zonneveld MN, van Beersum SE, Maumenee IH, Wolfrum U, Cheetham ME, Ueffing M, Cremers FP, Inglehearn CF, Roepman R (July 2007). "Mutations in LCA5, encoding the ciliary protein lebercilin, cause Leber congenital amaurosis". Nat. Genet. 39 (7): 889–95. doi:10.1038/ng2066. PMID 17546029. S2CID 13772221.


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