FLRT3

Protein-coding gene in the species Homo sapiens
FLRT3
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

5CMN, 5CMP

Identifiers
AliasesFLRT3, HH21, fibronectin leucine rich transmembrane protein 3
External IDsOMIM: 604808; MGI: 1918686; HomoloGene: 8322; GeneCards: FLRT3; OMA:FLRT3 - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for FLRT3
Genomic location for FLRT3
Band20p12.1Start14,322,985 bp[1]
End14,337,614 bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for FLRT3
Genomic location for FLRT3
Band2|2 F3Start140,492,834 bp[2]
End140,513,389 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • endothelial cell

  • lower lobe of lung

  • pericardium

  • Brodmann area 23

  • middle temporal gyrus

  • renal medulla

  • visceral pleura

  • germinal epithelium

  • jejunal mucosa

  • hair follicle
Top expressed in
  • hand

  • abdominal wall

  • hair follicle

  • otolith organ

  • ganglionic eminence

  • maxillary prominence

  • olfactory tubercle

  • utricle

  • skin of abdomen

  • medial ganglionic eminence
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • protein-macromolecule adaptor activity
  • protein homodimerization activity
  • fibroblast growth factor receptor binding
  • protein kinase inhibitor activity
  • protein binding
  • chemorepellent activity
Cellular component
  • cytoplasm
  • axon terminus
  • integral component of membrane
  • synaptic membrane
  • cell projection
  • endoplasmic reticulum membrane
  • membrane
  • cell-cell junction
  • focal adhesion
  • axonal growth cone
  • integral component of plasma membrane
  • extracellular region
  • axon
  • endoplasmic reticulum
  • extracellular space
  • cytosol
  • plasma membrane
  • cell junction
  • extracellular matrix
  • glutamatergic synapse
  • integral component of postsynaptic membrane
Biological process
  • negative chemotaxis
  • negative regulation of protein kinase activity
  • cytokine-mediated signaling pathway
  • head development
  • neuron projection extension
  • axon guidance
  • multicellular organism development
  • heart development
  • cell adhesion
  • response to axon injury
  • embryonic morphogenesis
  • proepicardium cell migration involved in pericardium morphogenesis
  • synapse assembly
  • neuron projection development
  • negative regulation of receptor signaling pathway via JAK-STAT
  • positive regulation of synapse assembly
  • fibroblast growth factor receptor signaling pathway
  • cell-cell adhesion via plasma-membrane adhesion molecules
  • synaptic membrane adhesion
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

23767

71436

Ensembl

ENSG00000125848

ENSMUSG00000051379

UniProt

Q9NZU0

Q8BGT1

RefSeq (mRNA)

NM_013281
NM_198391

NM_001172160
NM_178382

RefSeq (protein)

NP_037413
NP_938205

NP_001165631
NP_848469

Location (UCSC)Chr 20: 14.32 – 14.34 MbChr 2: 140.49 – 140.51 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Leucine-rich repeat transmembrane protein FLRT3 is a protein that in humans is encoded by the FLRT3 gene.[5][6]

FLRT1, FLRT2 and FLRT3 are members of the fibronectin leucine rich transmembrane protein (FLRT) family. They may function in cell adhesion and/or receptor signalling. Their protein structures resemble small leucine-rich proteoglycans found in the extracellular matrix. FLRT3 shares 55% amino acid sequence identity with FLRT1 and 44% identity with FLRT2. FLRT3 is expressed in kidney, brain, pancreas, skeletal muscle, lung, liver, placenta, and heart. Two alternatively spliced transcript variants encoding the same protein have been described for this gene.[6]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000125848 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000051379 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Lacy SE, Bonnemann CG, Buzney EA, Kunkel LM (Mar 2000). "Identification of FLRT1, FLRT2, and FLRT3: a novel family of transmembrane leucine-rich repeat proteins". Genomics. 62 (3): 417–26. doi:10.1006/geno.1999.6033. PMID 10644439.
  6. ^ a b "Entrez Gene: FLRT3 fibronectin leucine rich transmembrane protein 3".

Further reading

  • Otsuki T, Ota T, Nishikawa T, et al. (2007). "Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries". DNA Res. 12 (2): 117–26. doi:10.1093/dnares/12.2.117. PMID 16303743.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Clark HF, Gurney AL, Abaya E, et al. (2003). "The Secreted Protein Discovery Initiative (SPDI), a Large-Scale Effort to Identify Novel Human Secreted and Transmembrane Proteins: A Bioinformatics Assessment". Genome Res. 13 (10): 2265–70. doi:10.1101/gr.1293003. PMC 403697. PMID 12975309.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Deloukas P, Matthews LH, Ashurst J, et al. (2002). "The DNA sequence and comparative analysis of human chromosome 20". Nature. 414 (6866): 865–71. Bibcode:2001Natur.414..865D. doi:10.1038/414865a. PMID 11780052.
  • Nagase T, Kikuno R, Ishikawa K, et al. (2000). "Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 7 (2): 143–50. doi:10.1093/dnares/7.2.143. PMID 10819331.


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